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668 datasets found
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eQTL associations on Chromosome 22
University of AucklandDisease-associated SNPs on chromosome 22 were tested for eQTL associations using GTEx analysis (v7) and the CODeS3D pipeline. This dataset contains significant associations (FDR 0.05) from both methods.Created 12 March 2019 • Updated 8 August 2022 -
Phenotype-eGene associations in some multimorbid clusters.
University of AucklandConvex biclustering of shared eGenes among phenotypes resulted in several clusters (Supplementary Figure 4). For each eGene in a cluster, an eGene score (i.e. the percentage of the phenotypes whose associated variants affect the expression of the eGene) is calculated. This data gives for each eGene, the eGene score, number of traits with which the eGene...Created 12 March 2019 • Updated 8 August 2022 -
eGenes in mendelian disorders
University of AucklandChromatin interactions (using Hi-C) and functional (using eQTL) data were used to identify long-range regulatory associations involving >20,000 GWAS variants and their target genes (i.e. eGenes). Analysis of the OMIM data shows that eGenes, which are also involved in rare Mendelian disorders are spatially associated with eQTLs marked by common...Created 12 March 2019 • Updated 8 August 2022 -
eQTLs in the poly-unsaturated fat metabolism cluster
University of AucklandChromatin interactions (using Hi-C) and functional (using eQTL) data were used to identify long-range regulatory associations involving >20,000 GWAS variants and their target genes (i.e. eGenes). Convex biclustering was then used to segregate phenotypes that share eGenes, which implies a common underlying molecular mechanism. In the cluster that is built...Created 12 March 2019 • Updated 8 August 2022 -
Pleiotropy matrices for eGenes and eQTLs
University of AucklandThe Phenotype eQTL overlap sheet has names of phenotypes in columns TraitX and TraitY. The number of eQTLs identified for TraitX and TraitY are given in eQTLsX and eQTLsY. The column, Common, is the number of eQTLsY that are in eQTLsX. Ratio is Common divided by eQTLsX. The Phenotype eGene overlap sheet has names of phenotypes in columns TraitX and...Created 12 March 2019 • Updated 8 August 2022 -
Visualisation files for multimorbidity analysis
University of AucklandChromatin interactions (using Hi-C) and functional (using eQTL) data were used to identify long-range regulatory associations involving >20,000 GWAS variants and their target genes (i.e. eGenes) in >1,350 phenotypes in the GWAS Catalog. Using convex biclustering, we segregated phenotypes based on the eGenes they share, which implies a common...Created 12 March 2019 • Updated 8 August 2022 -
Protocol for systematic review: Associations of children’s active school...
University of AucklandSystematic review protocol using PROSPERO criteria for review titled: Associations of children’s active school travel with perceptions of the physical environment and characteristics of the social environment: a systematic review.Created 12 March 2019 • Updated 8 August 2022 -
PhD Thesis Appendix
University of AucklandAppendix files associated with the PhD thesis "Chromatin organization and gene regulation in granulocytic cells" by Elsie Carlota Jacobson Supplementary table 1. Significantly differentially expressed genes. All genes with significantly differential gene expression (false discovery rate (FDR) <0.05) between either 5µm pores compared to control, 14µm pores...Created 19 March 2019 • Updated 8 August 2022 -
MetaPost Three Ways
University of AucklandThis report describes three different approaches to communicating between R and MetaPost: importing the PostScript output from MetaPost with the 'grImport' package; calling the mpost program to solve MetaPost paths with the 'metapost' package; and calling the mplib library to solve MetaPost paths with the 'mplib' package.Created 12 March 2019 • Updated 8 August 2022 -
Supplementary_Material_Chapter_1_The_regulation_of_flowering_time
University of AucklandSupplementary material from Chapter 1 of my thesis entitled The regulation of flowering timeCreated 12 March 2019 • Updated 8 August 2022 -
Supplementary_Material_Chapter_2_Materials_and_methods
University of AucklandSupplementary material from Chapter 2 of my thesis entitled Materials and methodsCreated 12 March 2019 • Updated 8 August 2022 -
Supplementary_Material_Chapter_3_Characterising_the_late_flowering_phenotype_...
University of AucklandSupplementary material from Chapter 3 of my thesis entitled Characterising the late flowering phenotype in Tnt1 line NF1634Created 12 March 2019 • Updated 8 August 2022 -
Supplementary_Material_Chapter_6_Transcriptomic_response_Medicago_truncatula_...
University of AucklandSupplementary material from Chapter 6 of my thesis entitled Transcriptomic response of Medicago truncatula leaf tissue to a short day to long day shiftCreated 12 March 2019 • Updated 8 August 2022 -
Rendering HTML Content in R Graphics
University of AucklandThis report describes several R packages that allow HTML content to be rendered as part of an R plot. The core package is called 'layoutEngine', but that package requires a "backend" package to perform HTML layout calculations. Three example backends are demonstrated: 'layoutEngineCSSBox', 'layoutEnginePhantomJS', and 'layoutEngineDOM'. We also introduce...Created 12 March 2019 • Updated 8 August 2022 -
Mineral alteration and fractures influence on the elastic properties of...
University of AucklandIn this repository we provide the waveforms of all the elastic waves data of the manuscript by Duran, Adam, Wallis and Barnhoorn: "Mineral alteration and fractures influence on the elastic properties of pyroclastic rocks"Created 12 March 2019 • Updated 8 August 2022 -
Coastal cliff data
University of AucklandThese data are those used in Perry & Dickson JGR Eathr Surfaces to explore the sample size required to train effective models using machine-learning methods. The data have had their geographic locations removed in order to anonymise them. Data collected during database complication but not include in the analysis have also been removedCreated 12 March 2019 • Updated 8 August 2022 -
Supplemental Files
University of AucklandSupplemental Files referenced in doctoral thesis by Nicholas KnowltonCreated 19 March 2019 • Updated 8 August 2022 -
Soleus Masks and Fibre Vectors for Adolescents with Cerebral Palsy
University of AucklandThis folder contains muscle fibre vectors and STL masks from the soleus muscles of adolescents with cerebral palsy and able-bodied controls.Created 12 March 2019 • Updated 8 August 2022 -
SEM input for CNI-PPC to SDQ
University of AucklandThis is the AMOS input file for measuring the relationship of the parent responses to the Connectedness to Nature Index factors upon the parent responses to the Strengths and Difficulties Questionnaire (SDQ).Created 12 March 2019 • Updated 8 August 2022 -
Connectedness to Nature Index-Parents of PreSchool Children
University of AucklandThis data set in SPSS format was obtained by Dr Tanja Sobko from parent perceptions survey of pre-school children's connectedness to nature and their strengths and difficulties. The data consist of 25 items from the SDQ inventory and 20 items of the Connectedness to Nature Index for Parents of Preschool Children. Analyses were conducted by Prof Gavin...Created 12 March 2019 • Updated 8 August 2022
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