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Embedded Workspaces
New Zealand Universities FigshareMy presentation on the usage of embedded workspaces in the Physiome Model Repository given at the 7th International CellML Workshop. Embedded workspaces are implemented as mercurial subrepositories.Created 12 March 2019 • Updated 19 March 2019 -
The CellML Community
New Zealand Universities FigshareMy presentation on the CellML community, delivered at the 7th International CellML Workshop.Created 12 March 2019 • Updated 19 March 2019 -
SED-ML
New Zealand Universities FigshareMy SED-ML talk from the 7th International CellML Workshop, giving a brief overview of the current L1V1 specification and then going over the main changes to be introduced in SED-ML L1V2. The slides I presented are mostly borrowed from previous presentations by Dagmar Waltemath andĀ Frank Bergmann.Created 12 March 2019 • Updated 19 March 2019 -
Physiome Model Repository @ HARMONY 2013
New Zealand Universities FigshareThe slides from the Physiome Model Repository tutorial I gave at the 2013 Hackathon on Resources for Modeling in Biology (HARMONY).Created 12 March 2019 • Updated 19 March 2019 -
Generalized Epithelial Transport Modeling: Computational Physiology
New Zealand Universities FigshareA copy of my poster presented at Experimental Biology 2013, Boston, USA.Created 12 March 2019 • Updated 19 March 2019 -
CellML Update
New Zealand Universities FigshareMy presentation on CellML from the COMBINE 2013 meeting, 17 September 2013, Paris.Created 12 March 2019 • Updated 19 March 2019 -
Modelling Epithelial Transport - ICBME, 5 December 2013, Singapore
New Zealand Universities FigsharePresentation I gave at the ICBME conference held 3-7 December 2013 in Singapore.Created 12 March 2019 • Updated 19 March 2019 -
An interactive tool for exploring physiome models: introducing a python prototype
New Zealand Universities FigsharePoster I presented at the 2014 Auckland Bioengineering Research Forum.Created 12 March 2019 • Updated 19 March 2019 -
Mathematical Modelling of the Kidney - an update on ABI activities
New Zealand Universities FigshareA presentation I gave 28 February 2014 at the 25th New Zealand Nephrology Conference, Auckland, New Zealand. The slides were accompanied by a software demonstration, the software will shortly be available online via the GET project on BitBucket and readthedocs.Created 12 March 2019 • Updated 19 March 2019 -
Cardiac Electro-Mechanics: From CellML to the Whole Heart
New Zealand Universities FigshareMy PhD thesis in Bioengineering at the University of Auckland, completed March 2005. Supervised by Prof. Peter Hunter. Abstract We have developed a computational modelling and simulation framework for cardiac electromechanics which for the first time tightly couples cellular, tissue, and whole heart modelling paradigms. Application of the framework has...Created 12 March 2019 • Updated 19 March 2019 -
GET: Generalised Epithelial Transport
New Zealand Universities FigshareThe presentation I gave at the 8th International CellML Workshop introducing my suite of tools for modelling epoithelial transport using CellML.Created 12 March 2019 • Updated 19 March 2019 -
Introduction to the 8th International CellML Workshop - day 1
New Zealand Universities FigshareWelcome and overview of the first day of the 8th International CellML Workshop.Created 12 March 2019 • Updated 19 March 2019 -
Digital Literacy for Researchers at The University of Auckland
New Zealand Universities FigshareThis document summarises the thinking behind the needs to develop digital skills training for researchers.Created 12 March 2019 • Updated 19 March 2019 -
Type of parameterisation data effects the performance of landscape...
New Zealand Universities FigshareCopy of the NetLogo movement and reproduction model used to generate the cost-surfaces and biological data (all three types) analysed in this study.Created 12 March 2019 • Updated 19 March 2019