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549 datasets found
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CellML: current status and future directions
New Zealand Universities FigshareMy CellML presentation from the 2012 COMBINE meeting.Created 12 March 2019 • Updated 19 March 2019 -
Embedded Workspaces
New Zealand Universities FigshareMy presentation on the usage of embedded workspaces in the Physiome Model Repository given at the 7th International CellML Workshop. Embedded workspaces are implemented as mercurial subrepositories.Created 12 March 2019 • Updated 19 March 2019 -
The CellML Community
New Zealand Universities FigshareMy presentation on the CellML community, delivered at the 7th International CellML Workshop.Created 12 March 2019 • Updated 19 March 2019 -
SED-ML
New Zealand Universities FigshareMy SED-ML talk from the 7th International CellML Workshop, giving a brief overview of the current L1V1 specification and then going over the main changes to be introduced in SED-ML L1V2. The slides I presented are mostly borrowed from previous presentations by Dagmar Waltemath and Frank Bergmann.Created 12 March 2019 • Updated 19 March 2019 -
Physiome Model Repository @ HARMONY 2013
New Zealand Universities FigshareThe slides from the Physiome Model Repository tutorial I gave at the 2013 Hackathon on Resources for Modeling in Biology (HARMONY).Created 12 March 2019 • Updated 19 March 2019 -
Generalized Epithelial Transport Modeling: Computational Physiology
New Zealand Universities FigshareA copy of my poster presented at Experimental Biology 2013, Boston, USA.Created 12 March 2019 • Updated 19 March 2019 -
CellML Update
New Zealand Universities FigshareMy presentation on CellML from the COMBINE 2013 meeting, 17 September 2013, Paris.Created 12 March 2019 • Updated 19 March 2019 -
Modelling Epithelial Transport - ICBME, 5 December 2013, Singapore
New Zealand Universities FigsharePresentation I gave at the ICBME conference held 3-7 December 2013 in Singapore.Created 12 March 2019 • Updated 19 March 2019 -
An interactive tool for exploring physiome models: introducing a python prototype
New Zealand Universities FigsharePoster I presented at the 2014 Auckland Bioengineering Research Forum.Created 12 March 2019 • Updated 19 March 2019 -
Mathematical Modelling of the Kidney - an update on ABI activities
New Zealand Universities FigshareA presentation I gave 28 February 2014 at the 25th New Zealand Nephrology Conference, Auckland, New Zealand. The slides were accompanied by a software demonstration, the software will shortly be available online via the GET project on BitBucket and readthedocs.Created 12 March 2019 • Updated 19 March 2019 -
Cardiac Electro-Mechanics: From CellML to the Whole Heart
New Zealand Universities FigshareMy PhD thesis in Bioengineering at the University of Auckland, completed March 2005. Supervised by Prof. Peter Hunter. Abstract We have developed a computational modelling and simulation framework for cardiac electromechanics which for the first time tightly couples cellular, tissue, and whole heart modelling paradigms. Application of the framework has...Created 12 March 2019 • Updated 19 March 2019 -
GET: Generalised Epithelial Transport
New Zealand Universities FigshareThe presentation I gave at the 8th International CellML Workshop introducing my suite of tools for modelling epoithelial transport using CellML.Created 12 March 2019 • Updated 19 March 2019 -
OpenCMISS + CellML
New Zealand Universities FigshareBrief overview of the support for CellML in the OpenCMISS environment.Created 12 March 2019 • Updated 19 March 2019 -
CellML in practice: modularity & reuse; versioning and provenance; embedded...
New Zealand Universities FigshareA presentation I gave at the 8th International CellML Workshop describing some current examples of modularity and reuse, some thoughts on version control and provenance for CellML models, and the use of embedded workspaces in the physiome model repository.Created 12 March 2019 • Updated 19 March 2019 -
Introduction to the 8th International CellML Workshop - day 2
New Zealand Universities FigshareWelcome slides from the start of day 2 at the 8th International CellML Workshop, includes the introduction of nominees standing for election as CellML editors.Created 12 March 2019 • Updated 19 March 2019 -
Introduction to the 8th International CellML Workshop - day 1
New Zealand Universities FigshareWelcome and overview of the first day of the 8th International CellML Workshop.Created 12 March 2019 • Updated 19 March 2019 -
Introduction to SED-ML
New Zealand Universities FigshareMy "introduction to SED-ML" presentation from the 8th International CellML Workshop.Created 12 March 2019 • Updated 19 March 2019 -
Epithelial cell modeling: standards-based simulation experiments
New Zealand Universities FigshareMy poster presented at Experimental Biology 2014. Describing some of the software we have been developing to make use of community standards in the development and simulation of epithelial cell models.Created 12 March 2019 • Updated 19 March 2019 -
Cardiac cell model development time line
New Zealand Universities FigshareFigure 2 from my PhD thesis showing the time line of the development of the cellular models reviewed and developed in my thesis. The models on the left are focused on electrophysiology, those on the right on mechanical behaviour, and those down the middle are coupled electro-mechanics models. The blue text through the centre of the figure provides the...Created 12 March 2019 • Updated 19 March 2019 -
CellML, OpenCOR, and the Physiome Project Repository
New Zealand Universities FigshareSlides from my presentation at the COMBINE/ERASysAPP tutorial at the ICSB 2014 meeting, 14 September 2014, in Melbourne, Australia. This presentation provides a very brief introduction to CellML, the software powering the physiome repository (PMR2), and the software tool OpenCOR.Created 12 March 2019 • Updated 19 March 2019
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