data test

Poster I presented at the 2014 Auckland Bioengineering Research Forum.

My PhD thesis in Bioengineering at the University of Auckland, completed March 2005. Supervised by Prof. Peter Hunter. Abstract We have developed a computational modelling and simulation framework for cardiac electromechanics which for the first time tightly couples cellular, tissue, and whole heart modelling paradigms. Application of the framework has...

The presentation I gave at the 8th International CellML Workshop introducing my suite of tools for modelling epoithelial transport using CellML.

Brief overview of the support for CellML in the OpenCMISS environment.

My "introduction to SED-ML" presentation from the 8th International CellML Workshop.

My poster presented at Experimental Biology 2014. Describing some of the software we have been developing to make use of community standards in the development and simulation of epithelial cell models.

Slides from my presentation at the COMBINE/ERASysAPP tutorial at the ICSB 2014 meeting, 14 September 2014, in Melbourne, Australia. This presentation provides a very brief introduction to CellML, the software powering the physiome repository (PMR2), and the software tool OpenCOR.

My poster from the ICSB 2014 meeting. ABSTRACT: Background: PMR2 is the software framework supporting the Physiome Repository (https://models.physiomeproject.org). All content of the Physiome Repository is stored in version-controlled workspaces and specific revisions of a workspace can be exposed with a persistent URL and customisable presentation via...

Slides from my presentation on modularity and reuse at the "NORMSYS/ISBE Workshop: standards for data and model exchange in systems biology". Showing how the modularity and reuse aspects of CellML work with the physiome repository to enusre accurate provenance records and reproducible simulations across a distributed network of scientists.

Presentation I gave at the Auckland Bioengineering Institute's Friday Forum on 26th of September 2014. Described a bit of background as to why modularity and reuse is important in modelling of biological systems and how CellML provides facilities to enable modellers to make use of modularity and reuse in their model descriptions. Also talked about how the...

My poster presented at Experimental Biology 2015. Abstract: We have developed a software suite for the creation, simulation, and dissemination of epithelial cell models. The suite, known as GET (Generalized Epithelial Transport), is freely available under an open-source license at: http://get.readthedocs.org. GET consists of a model creation tool, a...

Presentation I gave at the VPH-Share General Assembly 2015, Krakow, Poland. Wednesday, 29 April 2015.

Poster from the IEEE EMBS Conference 2015, held in Milan, Italy. Introduces some key technologies enabling the development of the Virtual Physiological Human as well as some new material being developed to introduce new doctoral students to computational physiology.

This is a user guide for the R Shiny Application for the Centre of Methods and Policy Application in the Social Sciences project, Developing a knowledge laboratory of the early life-course using systematic reviews and meta analyses.