data test

My CellML presentation from the 2012 COMBINE meeting.

The slides from the Physiome Model Repository tutorial I gave at the 2013 Hackathon on Resources for Modeling in Biology (HARMONY).

A copy of my poster presented at Experimental Biology 2013, Boston, USA.

My presentation on CellML from the COMBINE 2013 meeting, 17 September 2013, Paris.

Presentation I gave at the ICBME conference held 3-7 December 2013 in Singapore.

Poster I presented at the 2014 Auckland Bioengineering Research Forum.

A presentation I gave 28 February 2014 at the 25th New Zealand Nephrology Conference, Auckland, New Zealand. The slides were accompanied by a software demonstration, the software will shortly be available online via the GET project on BitBucket and readthedocs.

My PhD thesis in Bioengineering at the University of Auckland, completed March 2005. Supervised by Prof. Peter Hunter. Abstract We have developed a computational modelling and simulation framework for cardiac electromechanics which for the first time tightly couples cellular, tissue, and whole heart modelling paradigms. Application of the framework has...

Brief overview of the support for CellML in the OpenCMISS environment.

A presentation I gave at the 8th International CellML Workshop describing some current examples of modularity and reuse, some thoughts on version control and provenance for CellML models, and the use of embedded workspaces in the physiome model repository.

Welcome slides from the start of day 2 at the 8th International CellML Workshop, includes the introduction of nominees standing for election as CellML editors.

My "introduction to SED-ML" presentation from the 8th International CellML Workshop.

My poster presented at Experimental Biology 2014. Describing some of the software we have been developing to make use of community standards in the development and simulation of epithelial cell models.

Slides from my presentation at the COMBINE/ERASysAPP tutorial at the ICSB 2014 meeting, 14 September 2014, in Melbourne, Australia. This presentation provides a very brief introduction to CellML, the software powering the physiome repository (PMR2), and the software tool OpenCOR.

My poster from the ICSB 2014 meeting. ABSTRACT: Background: PMR2 is the software framework supporting the Physiome Repository (https://models.physiomeproject.org). All content of the Physiome Repository is stored in version-controlled workspaces and specific revisions of a workspace can be exposed with a persistent URL and customisable presentation via...

Slides from my presentation on modularity and reuse at the "NORMSYS/ISBE Workshop: standards for data and model exchange in systems biology". Showing how the modularity and reuse aspects of CellML work with the physiome repository to enusre accurate provenance records and reproducible simulations across a distributed network of scientists.

Presentation I gave at the Auckland Bioengineering Institute's Friday Forum on 26th of September 2014. Described a bit of background as to why modularity and reuse is important in modelling of biological systems and how CellML provides facilities to enable modellers to make use of modularity and reuse in their model descriptions. Also talked about how the...

My poster presented at Experimental Biology 2015. Abstract: We have developed a software suite for the creation, simulation, and dissemination of epithelial cell models. The suite, known as GET (Generalized Epithelial Transport), is freely available under an open-source license at: http://get.readthedocs.org. GET consists of a model creation tool, a...

Presentation I gave at the VPH-Share General Assembly 2015, Krakow, Poland. Wednesday, 29 April 2015.

Poster from the IEEE EMBS Conference 2015, held in Milan, Italy. Introduces some key technologies enabling the development of the Virtual Physiological Human as well as some new material being developed to introduce new doctoral students to computational physiology.