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Generalized Epithelial Transport Modeling: Computational Physiology
New Zealand Universities FigshareA copy of my poster presented at Experimental Biology 2013, Boston, USA.Created 12 March 2019 • Updated 19 March 2019 -
An interactive tool for exploring physiome models: introducing a python prototype
New Zealand Universities FigsharePoster I presented at the 2014 Auckland Bioengineering Research Forum.Created 12 March 2019 • Updated 19 March 2019 -
Epithelial cell modeling: standards-based simulation experiments
New Zealand Universities FigshareMy poster presented at Experimental Biology 2014. Describing some of the software we have been developing to make use of community standards in the development and simulation of epithelial cell models.Created 12 March 2019 • Updated 19 March 2019 -
PMR2: supporting collaborative, reproducible, and discoverable science
New Zealand Universities FigshareMy poster from the ICSB 2014 meeting. ABSTRACT: Background: PMR2 is the software framework supporting the Physiome Repository (https://models.physiomeproject.org). All content of the Physiome Repository is stored in version-controlled workspaces and specific revisions of a workspace can be exposed with a persistent URL and customisable presentation via...Created 12 March 2019 • Updated 19 March 2019 -
Are isomiRs real or junk?
New Zealand Universities FigshareVariants of microRNAs (isomiRs) are commonly reported but their functional significance has been debated. Our study demonstrates that isomiRs are not junk, and that they function cooperatively with parental miRNAs.Created 12 March 2019 • Updated 19 March 2019 -
Imperfect centered sites - a new mode of miRNA binding
New Zealand Universities FigshareIt is thought that interactions between miRNAs and mRNAs occur using the seed region at the 5' end of the miRNA. Our study demonstrates that imperfect sites in the center of the miRNA are not only very common, they are functional too.Created 12 March 2019 • Updated 19 March 2019 -
Computational Tools for the Creation, Simulationand Dissemination of...
New Zealand Universities FigshareMy poster presented at Experimental Biology 2015. Abstract: We have developed a software suite for the creation, simulation, and dissemination of epithelial cell models. The suite, known as GET (Generalized Epithelial Transport), is freely available under an open-source license at: http://get.readthedocs.org. GET consists of a model creation tool, a...Created 12 March 2019 • Updated 19 March 2019 -
Developing the Virtual Physiological Human: tools, techniques, and best...
New Zealand Universities FigsharePoster from the IEEE EMBS Conference 2015, held in Milan, Italy. Introduces some key technologies enabling the development of the Virtual Physiological Human as well as some new material being developed to introduce new doctoral students to computational physiology.Created 12 March 2019 • Updated 19 March 2019 -
Stented Coronary Artery Haemodynamics from Computational Fluid Dynamics...
New Zealand Universities FigshareComputational fluid dynamics (CFD) comparison between two common stent designs regarding hemodynamic optimisation and minimising adverse flow induced vessel wall stresses.Created 12 March 2019 • Updated 19 March 2019 -
Scaled-Up Coronary Flow Measurement using Phase-Contrast MRI
New Zealand Universities FigshareTrue-scale CFD compared to scale-up phantom phase contrast MRI for patient-specific coronary flowCreated 12 March 2019 • Updated 19 March 2019 -
The Research Data Lifecycle
New Zealand Universities FigshareAn overview and data-centric view of the research process. The diagram is intended as a reference point or shared cognitive map to think about stages and transitions in data management and services.Created 12 March 2019 • Updated 19 March 2019 -
Modellingnutrient uptake in the gut using CellML and ApiNATOMY
New Zealand Universities FigsharePoster presentation at the 10th CellML workshop in Auckland - New ZealandCreated 12 March 2019 • Updated 19 March 2019 -
Proposed submission and curation workflows for publishing discoverable,...
New Zealand Universities FigsharePoster presented at the 2016 VPH Conference.Created 12 March 2019 • Updated 19 March 2019 -
A new method to quantify boundary conditions using dynamically scaled in...
New Zealand Universities FigshareUsing dynamic similarity to scale-up coronary phantoms for phase contrast MRI flow assessment to overcome spatio-temporal limitationsCreated 12 March 2019 • Updated 19 March 2019 -
Discoverable, Reproducible, and Reusable Biosimulation Models
New Zealand Universities FigsharePoster presented at Experimental Biology 2017, Chicago, IL, USA.Created 12 March 2019 • Updated 19 March 2019 -
Linking Computational Physiology Models with Clinical Data
New Zealand Universities FigshareLinking Computational Physiology Models with Clinical Data can be instrumental for real-world model validation as well as enable personalised and predictive clinical decision support systems. Electronic health records (EHR) are sinks of biomedical knowledge and include manifestations of genomic and environmental aspects that impact on biological systems....Created 12 March 2019 • Updated 19 March 2019 -
Is muscle co-activation preferentially driven by overlapping cortical map regions?
New Zealand Universities FigsharePresented at the International Society for Biomechanics meeting, Brisbane, 2017. This study examines whether overlapping portions of muscle maps from proximal (FDI) and distal (AD) muscles are preferentially excited when the two muscles are involved in a synergistic task, compared to when they are activated independently.Created 19 March 2019 • Updated 19 March 2019 -
A High Resolution Bi-atrial Optical Mapping System for the Analysis of...
New Zealand Universities FigsharePoster presented at CinC 2017.Created 12 March 2019 • Updated 19 March 2019 -
Poster_Valencia.pdf
New Zealand Universities FigsharePoster presented at atrial signals 2017, ValenciaCreated 12 March 2019 • Updated 19 March 2019 -
Introducing the Physiome Journal: Improving Reproducibility, Reuse, and...
New Zealand Universities FigsharePoster presented at the IEEE eScience 2017 meeting, Auckland, New ZealandCreated 12 March 2019 • Updated 19 March 2019