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  • MozFest2014-OS-Skills-Curriculum

    New Zealand Universities Figshare
    MozFest 2014 and New Zealand Open Science Skills and Curriculum Workshop
    Created 12 March 2019 Updated 19 March 2019
  • Open-Research-Proposals

    New Zealand Universities Figshare
    A place to draft grant proposals in the open
    Created 12 March 2019 Updated 19 March 2019
  • Source code (R and NetLogo) for Perry et al. J Appl. Ecol (DoI:...

    New Zealand Universities Figshare
    Source code for Perry, Etherington & Moloney in Journal of Applied Ecology (DoI: 10.1111/1365-2664.12827)
    Created 12 March 2019 Updated 19 March 2019
  • Type of parameterisation data effects the performance of landscape...

    New Zealand Universities Figshare
    Copy of the NetLogo movement and reproduction model used to generate the cost-surfaces and biological data (all three types) analysed in this study.
    Created 12 March 2019 Updated 19 March 2019
  • Python script to compute proportionality of source energy to detection amplitude

    New Zealand Universities Figshare
    Python script used to analyze laser-ultrasound data.  We analyze the proportionality between the amplitude of laser-ultrasound waves recorded with GCLAD and the source laser energy.
    Created 12 March 2019 Updated 19 March 2019
  • notebooks for seismology 101

    New Zealand Universities Figshare
    obspy notebooks for seismology
    Created 12 March 2019 Updated 19 March 2019
  • Source code (NetLogo) for Bowman & Perry, Plant and Soil Marschner review.

    New Zealand Universities Figshare
    This is the NetLogo 6.0.1 source code with accompanying description for the simulation model in Bowman & Perry Plant and Soil.
    Created 12 March 2019 Updated 19 March 2019
  • Assessing the reliability of landscape connectivity metrics utilising a...

    New Zealand Universities Figshare
    The Netlogo movement model used within the our study, along with the supporting files and folder required to run the model.
    Created 12 March 2019 Updated 19 March 2019
  • bouncyball.ipynb

    New Zealand Universities Figshare
    A jupyter notebook to investigate the path and time of flight of a bouncing ball.
    Created 12 March 2019 Updated 19 March 2019
  • Chapter 4: Spherical and cylindrical coordinates

    New Zealand Universities Figshare
    A notebook to accompany chapter 4 of our book on the transformation between coordinate systems. The application is to Gaussian functions, and their integral
    Created 12 March 2019 Updated 19 March 2019
  • Chapter 9: Stokes' Theorem

    New Zealand Universities Figshare
    A notebook applying Stokes Theorem to the Biot-Savart Law to find the magnetic field in the presence of a current in a long straight wire.
    Created 12 March 2019 Updated 19 March 2019
  • The Laplacian

    New Zealand Universities Figshare
    A notebook to illustrate the Laplacian, and the Laplace equation with an example of the shape of a soap film.
    Created 12 March 2019 Updated 19 March 2019
  • The transcriptomic response to a short day to long day shift in leaves of...

    New Zealand Universities Figshare
    Processed data and R code sufficient to reproduce the analysis in "The transcriptomic response to a short day to long day shift in the reference legume Medicago truncatula" by Thomson et al. (2019). Combines two similar experiments where plants were grown in short-day photoperiods and shifted to long-day photoperiods after 10 days. Triplicate RNA-seq...
    Created 12 March 2019 Updated 19 March 2019
  • Supplementary_Material_GThomsonThesis

    New Zealand Universities Figshare
    A custom R package called GThomsonThesis which is used for the analysis of the data presented
    Created 12 March 2019 Updated 19 March 2019
  • Source Code (Netlogo 5.3.1) for Perry & O'Sullivan Hunter-gatherer...

    New Zealand Universities Figshare
    Zip code with files required to run the hunter-gatherer model used in Perry & O'Sullivan in Journal of Archaeological Method & Theory (in review). Unzip all files to the same directory and open the .nlogo file. Source requires NetLogo version 5.3.1
    Created 12 March 2019 Updated 19 March 2019
  • Creating time-activity diagrams to visualise compositional time use patterns...

    New Zealand Universities Figshare
    This publication includes two sets of R code. The first code, named ‘1_set_up_n_create_time_activity_diagram_individual_n_aggregate.R’, has two parts. Part one sets up parameters and loads and processes the data. The original data should be in a format so that the end time of the previous activity episode is equals to the start time of the following...
    Created 19 March 2019 Updated 19 March 2019